Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 15
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    85411797 G>A  Pum=0.857  Qui=0.526  Rio=0.0
    85411821 T>A  Pum=1.0  Qui=0.52  Rio=0.0
    85411824 A>T  Pum=1.0  Qui=0.538  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      7        0   11.0
Qui1     Qui    75.0      4        0    4.0
Qui2     Qui    33.3      3        0    7.5
Qui3     Qui    50.0      4        0    5.5
Qui4     Qui    33.3      6        0    8.5
Rio1     Rio    83.3      6        0    8.0
Rio2     Rio   100.0      6        0    7.5
Rio3     Rio   100.0      2        0    4.0
Rio4     Rio   100.0      7        0    8.0