Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 105
  seen in >= 2 oysters: 37
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 10  [CpG-destroying: 1]
    85411029 G>T  Pum=0.8  Qui=0.533  Rio=0.0
    85411687 T>A  Pum=0.909  Qui=0.697  Rio=0.0
    85411731 A>T  Pum=0.941  Qui=0.667  Rio=0.0
    85411734 G>T  Pum=1.0  Qui=0.692  Rio=0.0
    85411797 G>A  Pum=0.857  Qui=0.526  Rio=0.0
    85411821 T>A  Pum=1.0  Qui=0.52  Rio=0.0
    85411824 A>T  Pum=1.0  Qui=0.538  Rio=0.0
    85411856 A>G  Pum=1.0  Qui=0.55  Rio=0.0
    85411883 T>C  Pum=1.0  Qui=0.571  Rio=0.0
    85411889 T>C  Pum=1.0  Qui=0.545  Rio=0.0

28 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    42.8    159        6    6.7
Qui1     Qui    69.8    149        0    5.9
Qui2     Qui    70.5     95        0    5.7
Qui3     Qui    74.5    110        0    4.4
Qui4     Qui    70.6    136        4    6.7
Rio1     Rio    92.5    106        0    5.6
Rio2     Rio    94.7    152        0    7.5
Rio3     Rio    93.5    107        0    6.4
Rio4     Rio    94.6    148        0    6.6