Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 32
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    68.4     19        0    3.2
Qui1     Qui    11.8     34        0    4.5
Qui2     Qui    18.8     69        0   10.6
Qui3     Qui     8.5     47        0    8.2
Qui4     Qui     5.4     56        0    7.6
Rio1     Rio    40.0     30        0    3.0
Rio2     Rio     5.9     17        0    3.4
Rio3     Rio     0.0      3        0    2.4
Rio4     Rio    17.4     46        0    5.4