Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 70
  seen in >= 2 oysters: 12
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 1]
    77706160 G>A  Pum=  Qui=0.778  Rio=0.1
    77706178 A>T  Pum=  Qui=0.6  Rio=0.0
    77706202 A>G  Pum=  Qui=1.0  Rio=0.067
    77706279 T>A  Pum=0.0  Qui=1.0  Rio=0.133
    77706303 A>T  Pum=0.0  Qui=1.0  Rio=0.154
    77706453 A>T  Pum=  Qui=0.5  Rio=0.0
    77706905 A>T  Pum=0.429  Qui=1.0  Rio=0.12

24 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    38.9     54        0    3.8
Qui1     Qui     7.9     76        0    3.6
Qui2     Qui    18.6     59        0    4.5
Qui3     Qui    12.2     82        0    3.8
Qui4     Qui    16.8    107        0    4.9
Rio1     Rio    82.2    107        0    5.2
Rio2     Rio    90.0     40        0    3.1
Rio3     Rio    63.3     98        0    4.2
Rio4     Rio    58.4    166        0    7.8