Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    77291096 C>T  Pum=0.0  Qui=1.0  Rio=0.077

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    25.0      8        0   12.5
Qui1     Qui     0.0      3        1    6.0
Qui2     Qui     0.0      6        1    9.0
Qui3     Qui     0.0     14        0   14.5
Qui4     Qui     0.0      3        1    9.0
Rio1     Rio    25.0      4        0    5.5
Rio2     Rio    80.0      5        0    8.0
Rio3     Rio    42.9      7        0    7.0
Rio4     Rio    75.0      4        0   11.5