Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 40
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

35 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    78.8     33        0    6.4
Qui1     Qui     0.0      4        0    2.4
Qui2     Qui    29.4     17        0    4.2
Qui3     Qui    40.7     27        0    4.0
Qui4     Qui     0.0      6        0    3.4
Rio1     Rio    86.2    123        0    8.2
Rio2     Rio    35.0     20        0    4.6
Rio3     Rio    82.1     28        0    7.9
Rio4     Rio    76.8     82        0    9.5