Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

27 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    26.3     99        0   14.5
Qui1     Qui    58.5    123        0   11.1
Qui2     Qui    48.9     47        0   10.2
Qui3     Qui    24.3    148        0   15.4
Qui4     Qui    61.2     49        0    7.5
Rio1     Rio     0.0     94        0   13.9
Rio2     Rio     2.5     81        0    9.9
Rio3     Rio     0.0     44        0    8.2
Rio4     Rio     3.1    131        0   12.8