Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    86.9     61        0    7.4
Qui1     Qui    92.9     84        0    8.5
Qui2     Qui    50.0     12        0    5.9
Qui3     Qui    67.6     68        0    6.9
Qui4     Qui    63.5     63        0    6.3
Rio1     Rio    22.4     49        1    6.5
Rio2     Rio    13.6     59        0    5.5
Rio3     Rio     9.7     31        0    6.0
Rio4     Rio     7.7     39        1    5.8