Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    71158075 G>T  Pum=0.0  Qui=0.522  Rio=0.0

16 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     24        0    5.7
Qui1     Qui    20.7     29        0    7.0
Qui2     Qui    59.1     44        0    4.6
Qui3     Qui    50.0     68        0    8.8
Qui4     Qui    74.5     51        0    7.6
Rio1     Rio     0.0     47        0    7.6
Rio2     Rio    24.5     53        0    9.2
Rio3     Rio     1.3     75        0    6.9
Rio4     Rio     0.0     43        0    7.5