Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 24
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    6859233 C>A  Pum=  Qui=0.5  Rio=0.0

11 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.0     20        0    3.8
Qui1     Qui    61.1     36        1   10.3
Qui2     Qui    66.7     27        1    8.6
Qui3     Qui    88.2     34        1    8.8
Qui4     Qui    71.0     31        1    8.0
Rio1     Rio    93.8     16        0    6.7
Rio2     Rio    83.3     24        0    6.6
Rio3     Rio    86.4     22        0    6.9
Rio4     Rio    66.7     21        0    6.8