Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 21
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    76.3     76        0    6.2
Qui1     Qui    67.3     98        0    8.0
Qui2     Qui    74.5     55        0    4.7
Qui3     Qui    69.8     86        0    8.7
Qui4     Qui    69.2     65        0    7.1
Rio1     Rio    94.9     98        0    7.2
Rio2     Rio    84.4     77        0    5.7
Rio3     Rio    88.7     62        1    6.1
Rio4     Rio    88.7     97        0    7.5