Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 16
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    81.9     94        0    5.8
Qui1     Qui    39.5     86        0    6.2
Qui2     Qui    46.4    138        0    8.0
Qui3     Qui     4.5     89        0    6.0
Qui4     Qui    35.7     42        0    2.5
Rio1     Rio    80.8    125        0    6.8
Rio2     Rio    84.9     93        0    6.6
Rio3     Rio    82.4    125        0    6.9
Rio4     Rio    87.5    144        0    7.8