Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 44
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 1]
    61701117 T>A  Pum=0.0  Qui=0.531  Rio=0.0
    61701273 T>A  Pum=0.0  Qui=0.707  Rio=0.0
    61701824 G>A  Pum=0.0  Qui=0.5  Rio=0.0

7 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.9     27        0    7.9
Qui1     Qui    63.3     30        0    7.5
Qui2     Qui    17.6     17        0    8.2
Qui3     Qui    23.3     43        0    8.5
Qui4     Qui    65.0     20        0    6.1
Rio1     Rio    52.9     17        0    9.0
Rio2     Rio    71.8     39        0    8.1
Rio3     Rio    70.8     24        0    6.3
Rio4     Rio    58.3     12        0    6.7