Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 2]
    61683555 C>T  Pum=0.0  Qui=0.571  Rio=0.0
    61683582 A>G  Pum=0.0  Qui=0.576  Rio=0.045
    61683591 G>A  Pum=0.0  Qui=0.5  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      5        0   11.0
Qui1     Qui    25.0      4        1    9.0
Qui2     Qui              0        1    9.0
Qui3     Qui    33.3      3        1   10.0
Qui4     Qui    66.7      3        1   10.0
Rio1     Rio   100.0      2        0   10.0
Rio2     Rio   100.0      1        0    9.0
Rio3     Rio    50.0      2        0   11.0
Rio4     Rio   100.0      1        0   15.0