Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    61673863 G>A  Pum=  Qui=0.5  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      3        0   10.0
Qui1     Qui    16.7      6        0    8.0
Qui2     Qui    20.0      5        0   10.0
Qui3     Qui    50.0      2        0    6.5
Qui4     Qui    16.7      6        0   10.0
Rio1     Rio    50.0      4        0   11.5
Rio2     Rio    83.3      6        0    8.0
Rio3     Rio   100.0      1        0    6.0
Rio4     Rio    60.0      5        0   12.5