Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    61669652 G>A  Pum=0.0  Qui=0.578  Rio=0.0
    61669669 A>T  Pum=0.0  Qui=0.586  Rio=0.0

1 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0   10.0
Qui1     Qui    60.0     10        0   12.0
Qui2     Qui    36.4     11        0   13.5
Qui3     Qui    27.3     11        0   18.0
Qui4     Qui    38.5     13        0   18.0
Rio1     Rio    77.8      9        0   17.5
Rio2     Rio    83.3      6        0    8.0
Rio3     Rio    80.0      5        0    7.0
Rio4     Rio   100.0      4        0    7.0