Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 46
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

18 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    82.9     41        0    4.0
Qui1     Qui    70.5     44        0    4.4
Qui2     Qui    86.8     38        0    4.4
Qui3     Qui    72.5     51        0    5.3
Qui4     Qui    66.7     27        0    4.7
Rio1     Rio    83.7     49        0    5.8
Rio2     Rio    88.4     43        0    4.9
Rio3     Rio    80.4     51        0    3.8
Rio4     Rio    84.4     32        0    6.3