Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    40.0      5        0   21.0
Qui1     Qui     0.0      9        0   14.5
Qui2     Qui     0.0      5        0   14.0
Qui3     Qui     0.0      2        0   23.5
Qui4     Qui     0.0      6        0   18.0
Rio1     Rio    80.0      5        0   14.5
Rio2     Rio    16.7      6        0   18.5
Rio3     Rio    50.0      4        0   11.5
Rio4     Rio    14.3      7        0   27.0