Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

17 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    10.7     28        0    6.8
Qui1     Qui    38.5     39        0    6.2
Qui2     Qui    61.5     26        0    5.7
Qui3     Qui    76.9     26        0    6.1
Qui4     Qui    72.7     11        0    1.9
Rio1     Rio     0.0     24        0    5.6
Rio2     Rio     0.0     26        0    4.0
Rio3     Rio     5.6     18        0    4.9
Rio4     Rio     0.0     18        0    4.6