Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    53382703 C>A  Pum=  Qui=0.0  Rio=0.778

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0    9.0
Qui1     Qui    33.3      6        0   12.0
Qui2     Qui    60.0     15        0   16.0
Qui3     Qui    72.7     11        0   13.0
Qui4     Qui   100.0      5        0    6.0
Rio1     Rio   100.0      7        0   13.0
Rio2     Rio   100.0      9        0   17.0
Rio3     Rio   100.0      8        0   12.0
Rio4     Rio   100.0     11        0   13.0