Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    10.3     39        0    5.5
Qui1     Qui    35.7     28        0    5.5
Qui2     Qui    28.0     25        0    4.6
Qui3     Qui    31.2     32        0    5.0
Qui4     Qui    26.9     26        0    5.2
Rio1     Rio     5.9     51        0    8.3
Rio2     Rio    28.9     45        0    5.5
Rio3     Rio    21.1     38        0    5.0
Rio4     Rio    15.6     32        0    4.9