Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    43453595 A>G  Pum=0.0  Qui=0.652  Rio=0.0
    43453618 T>G  Pum=0.0  Qui=0.591  Rio=0.0
    43453620 G>A  Pum=0.0  Qui=0.619  Rio=0.0
    43453631 G>A  Pum=0.0  Qui=0.636  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    10.0     10        0    9.5
Qui1     Qui     0.0      5        0    5.5
Qui2     Qui     0.0      7        0    7.0
Qui3     Qui     0.0      3        0    3.0
Qui4     Qui     0.0     11        0   11.0
Rio1     Rio    50.0      8        0    8.0
Rio2     Rio    90.0     10        0   10.0
Rio3     Rio     0.0      3        0    3.0
Rio4     Rio    90.9     11        0   11.0