Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    43452936 A>G  Pum=0.0  Qui=0.613  Rio=0.038
    43453019 G>A  Pum=0.0  Qui=0.515  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      5        0    6.5
Qui1     Qui    50.0      4        0    4.0
Qui2     Qui     0.0     10        0   10.0
Qui3     Qui     0.0      6        0    6.0
Qui4     Qui    27.3     11        0   11.0
Rio1     Rio   100.0      5        0    6.0
Rio2     Rio    87.5      8        0    9.0
Rio3     Rio   100.0      6        0    6.0
Rio4     Rio   100.0     13        0   13.5