Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    43047354 T>C  Pum=0.333  Qui=0.5  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    42.9      7        0   10.0
Qui1     Qui   100.0      1        0    5.0
Qui2     Qui   100.0      3        0    9.0
Qui3     Qui    83.3      6        0   14.5
Qui4     Qui    80.0      5        0    7.0
Rio1     Rio    16.7      6        0    8.5
Rio2     Rio    37.5      8        0   11.5
Rio3     Rio    42.9      7        0   13.0
Rio4     Rio    66.7      6        0   11.5