Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      5        0   11.0
Qui1     Qui    20.0     10        0   21.0
Qui2     Qui     0.0      8        0   19.0
Qui3     Qui     0.0     14        0   29.0
Qui4     Qui     0.0     11        0   21.5
Rio1     Rio    72.7     11        0   28.5
Rio2     Rio    40.0      5        0   11.0
Rio3     Rio    50.0     10        0   16.5
Rio4     Rio    50.0      6        0   14.5