Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 45
  seen in >= 2 oysters: 18
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

26 CpGs in target; 21 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    11.0    100        0    7.7
Qui1     Qui     2.5    158        0    9.6
Qui2     Qui     1.7    121        0    9.5
Qui3     Qui     1.1    181        0   12.8
Qui4     Qui     1.5    137        0    8.4
Rio1     Rio    53.8    130        0   12.0
Rio2     Rio    23.6    110        0    8.4
Rio3     Rio    29.4    136        0    7.7
Rio4     Rio    19.0    126        0    8.7