Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 33
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

10 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    56.7     60        0   11.1
Qui1     Qui    27.9     43        0    7.5
Qui2     Qui    44.9     49        0    7.7
Qui3     Qui    45.5     44        1    9.1
Qui4     Qui    37.1     35        0    6.7
Rio1     Rio    58.9     56        0    9.7
Rio2     Rio    50.9     53        0    8.1
Rio3     Rio    44.4     27        0    6.3
Rio4     Rio    57.8     64        0   10.9