Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 36
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

16 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     25        0    2.5
Qui1     Qui    52.0     50        0    7.6
Qui2     Qui    34.2     38        0    5.3
Qui3     Qui    24.2     33        0    6.6
Qui4     Qui     9.1     22        0    3.1
Rio1     Rio     0.0     35        0    5.9
Rio2     Rio     7.4     27        0    4.4
Rio3     Rio     3.6     28        0    3.7
Rio4     Rio     0.0     45        0    5.2