Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 4 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      9        0   11.2
Qui1     Qui    72.4     29        0    8.8
Qui2     Qui    83.3     12        0   10.5
Qui3     Qui    69.2     13        0    8.9
Qui4     Qui              0        0    4.8
Rio1     Rio     0.0     13        0   14.4
Rio2     Rio     0.0     13        0    7.2
Rio3     Rio     0.0      7        0    7.4
Rio4     Rio     0.0     27        0    8.5