Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 24
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    86.2     58        0    9.7
Qui1     Qui    65.1     43        0    8.9
Qui2     Qui    61.2     80        0    7.7
Qui3     Qui    50.0     64        0    7.9
Qui4     Qui    55.6     36        0    5.8
Rio1     Rio    77.5     71        1    9.5
Rio2     Rio    75.8     66        1    8.5
Rio3     Rio    64.5     76        0    7.4
Rio4     Rio    75.7     74        0    8.0