Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    18840841 G>T  Pum=0.0  Qui=0.0  Rio=0.613

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0    4.0
Qui1     Qui   100.0      9        0    9.0
Qui2     Qui   100.0      6        0    7.0
Qui3     Qui   100.0      9        0   10.5
Qui4     Qui   100.0     11        0   11.5
Rio1     Rio    50.0     10        0   11.0
Rio2     Rio     0.0      8        0   10.0
Rio3     Rio   100.0      2        0    2.0
Rio4     Rio    45.5     11        0   11.0