Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    18831779 G>A  Pum=1.0  Qui=0.0  Rio=0.556
    18831826 C>T  Pum=  Qui=0.0  Rio=0.714

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0    4.0
Qui1     Qui   100.0      4        0    7.0
Qui2     Qui   100.0      1        0    2.0
Qui3     Qui   100.0      4        0    7.0
Qui4     Qui   100.0      3        0    6.0
Rio1     Rio    25.0      4        1    9.0
Rio2     Rio     0.0      1        1    4.0
Rio3     Rio    66.7      3        1    7.0
Rio4     Rio    20.0      5        0    7.0