Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    18831028 C>T  Pum=0.958  Qui=0.0  Rio=0.786

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.3      6        0  137.5
Qui1     Qui   100.0      1        0    9.0
Qui2     Qui   100.0      1        0   10.0
Qui3     Qui              0        0   20.0
Qui4     Qui              0        0    8.0
Rio1     Rio              0        1   14.5
Rio2     Rio              0        1   18.0
Rio3     Rio              0        1   18.0
Rio4     Rio              0        1   22.5