Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 8
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 3]
    18830504 T>A  Pum=0.148  Qui=0.024  Rio=0.568
    18830528 C>T  Pum=0.0  Qui=0.0  Rio=0.569
    18830554 C>T  Pum=0.008  Qui=0.0  Rio=0.523
    18830574 T>A  Pum=0.051  Qui=0.0  Rio=0.642
    18830593 C>T  Pum=0.901  Qui=0.0  Rio=0.848

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      8        0  137.5
Qui1     Qui              0        0    7.0
Qui2     Qui              0        0   10.0
Qui3     Qui              0        0   13.0
Qui4     Qui              0        0    7.0
Rio1     Rio   100.0      1        1   13.0
Rio2     Rio              0        1   27.5
Rio3     Rio              0        1   21.0
Rio4     Rio    50.0      4        1   31.0