Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 4  [CpG-destroying: 2]
    18830504 T>A  Pum=0.148  Qui=0.024  Rio=0.568
    18830528 C>T  Pum=0.0  Qui=0.0  Rio=0.569
    18830554 C>T  Pum=0.008  Qui=0.0  Rio=0.523
    18830574 T>A  Pum=0.051  Qui=0.0  Rio=0.642

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      6        0   96.5
Qui1     Qui              0        0    7.0
Qui2     Qui              0        0   10.0
Qui3     Qui   100.0      1        0   14.0
Qui4     Qui              0        0    8.5
Rio1     Rio   100.0      1        1   11.0
Rio2     Rio              0        1   21.0
Rio3     Rio              0        1   19.5
Rio4     Rio    66.7      3        1   24.5