Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    18829350 G>T  Pum=  Qui=0.0  Rio=0.562
    18829353 G>A  Pum=  Qui=0.0  Rio=0.562

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      1        1    7.0
Qui1     Qui   100.0      6        0    9.0
Qui2     Qui   100.0      7        0   16.5
Qui3     Qui   100.0      1        0    8.0
Qui4     Qui   100.0      2        0   12.0
Rio1     Rio    33.3      6        0   11.0
Rio2     Rio     0.0      3        0    4.5
Rio3     Rio     0.0      1        1    7.0
Rio4     Rio    50.0      2        1   17.0