Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    18800115 T>A  Pum=0.889  Qui=0.0  Rio=0.676
    18800139 C>T  Pum=0.8  Qui=0.0  Rio=0.692

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    12.5      8        1   13.0
Qui1     Qui   100.0      3        0    6.0
Qui2     Qui   100.0      4        0    7.5
Qui3     Qui    85.7      7        0   12.0
Qui4     Qui   100.0      5        0    7.0
Rio1     Rio    16.7      6        0    7.5
Rio2     Rio     0.0      4        1    7.0
Rio3     Rio    33.3      9        1   14.0
Rio4     Rio    33.3      3        1    6.0