Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

29 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    69.2     26        1    4.5
Qui1     Qui     0.0     34        0    2.8
Qui2     Qui     0.0     31        0    4.8
Qui3     Qui              0        0    1.3
Qui4     Qui     0.0     40        0    4.3
Rio1     Rio    51.4     37        0    6.0
Rio2     Rio    95.9     49        0    4.5
Rio3     Rio    57.1     21        0    3.2
Rio4     Rio    80.6     31        0    5.0