Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    18135802 A>T  Pum=0.0  Qui=0.0  Rio=0.667
    18135843 T>G  Pum=0.0  Qui=0.0  Rio=0.667

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0      5        0    5.0
Qui1     Qui    33.3      3        0    7.5
Qui2     Qui    50.0      2        0    3.0
Qui3     Qui    50.0      4        0    5.0
Qui4     Qui    60.0      5        0    5.5
Rio1     Rio     0.0      5        0    6.0
Rio2     Rio     0.0      7        0    7.0
Rio3     Rio     0.0      5        0    8.0
Rio4     Rio     0.0      5        0    6.0