Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 25
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 1]
    18135028 G>T  Pum=  Qui=0.0  Rio=0.545
    18135152 A>T  Pum=0.0  Qui=0.0  Rio=0.588
    18135358 G>A  Pum=0.0  Qui=0.0  Rio=1.0
    18135398 T>G  Pum=0.0  Qui=0.0  Rio=0.731
    18135534 A>G  Pum=0.0  Qui=0.0  Rio=0.789
    18135802 A>T  Pum=0.0  Qui=0.0  Rio=0.667
    18135843 T>G  Pum=0.0  Qui=0.0  Rio=0.667

30 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    15.9    145        0    5.7
Qui1     Qui    41.6    125        0    6.5
Qui2     Qui    67.5    117        0    4.5
Qui3     Qui    26.1    134        0    5.3
Qui4     Qui    36.8    114        0    4.4
Rio1     Rio     2.1    146        0    5.7
Rio2     Rio     1.6    126        0    5.2
Rio3     Rio     0.0    109        1    4.7
Rio4     Rio     0.0    131        0    6.2