Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    18044845 G>A  Pum=1.0  Qui=0.0  Rio=0.667

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      6        0    9.0
Qui1     Qui   100.0      3        0    5.0
Qui2     Qui   100.0      7        0   10.0
Qui3     Qui    75.0      4        0    7.0
Qui4     Qui    88.9      9        0   11.0
Rio1     Rio    33.3      3        0    7.0
Rio2     Rio     0.0      4        0    7.5
Rio3     Rio    50.0      4        0    6.0
Rio4     Rio     0.0      5        0    9.0