Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 0]
    17952908 T>C  Pum=0.5  Qui=0.0  Rio=0.644
    17952938 T>C  Pum=0.667  Qui=0.0  Rio=0.614
    17952952 A>T  Pum=0.5  Qui=0.0  Rio=0.5

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        1    9.0
Qui1     Qui   100.0      2        0    8.5
Qui2     Qui   100.0      4        0   12.0
Qui3     Qui   100.0      7        0   12.0
Qui4     Qui   100.0      3        0    6.0
Rio1     Rio   100.0      2        1    9.5
Rio2     Rio    57.1      7        1   14.0
Rio3     Rio     0.0      1        1    7.5
Rio4     Rio    28.6      7        0   13.5