Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 42
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 0]
    17845044 A>T  Pum=1.0  Qui=0.975  Rio=0.091
    17845080 T>C  Pum=0.75  Qui=0.759  Rio=0.043
    17845106 A>G  Pum=0.75  Qui=0.737  Rio=0.0

32 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    21.1     38        0    2.8
Qui1     Qui    32.7     52        0    3.8
Qui2     Qui    27.1     48        0    2.7
Qui3     Qui    53.2     47        0    3.4
Qui4     Qui    17.0     47        0    3.0
Rio1     Rio     1.2    166        0    6.1
Rio2     Rio     5.6     90        0    3.2
Rio3     Rio     0.0     70        0    4.1
Rio4     Rio     0.7    143        0    5.8