Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    17844942 G>A  Pum=  Qui=1.0  Rio=0.056
    17844996 G>A  Pum=1.0  Qui=1.0  Rio=0.045

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    9.0
Qui1     Qui   100.0      4        0   10.5
Qui2     Qui    66.7      9        0   14.0
Qui3     Qui    80.0     10        0   15.5
Qui4     Qui    44.4      9        0   12.0
Rio1     Rio     0.0      9        0   11.5
Rio2     Rio     0.0      4        0    9.0
Rio3     Rio     0.0      4        0    8.0
Rio4     Rio     0.0      5        0    7.0