Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 0]
    17844240 A>G  Pum=0.571  Qui=0.739  Rio=0.0
    17844251 A>G  Pum=0.625  Qui=0.7  Rio=0.0
    17844255 A>G  Pum=0.625  Qui=0.75  Rio=0.0
    17844259 A>T  Pum=0.625  Qui=0.667  Rio=0.0
    17844297 G>T  Pum=1.0  Qui=1.0  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    60.0      5        0    8.0
Qui1     Qui   100.0      4        0    6.0
Qui2     Qui    60.0      5        0    8.0
Qui3     Qui    50.0      4        0    5.0
Qui4     Qui     0.0      1        0    1.0
Rio1     Rio     0.0      4        0    5.5
Rio2     Rio     0.0      4        0    6.5
Rio3     Rio     0.0      1        0    2.5
Rio4     Rio     0.0      9        0   12.0