Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 2]
    17844043 T>A  Pum=1.0  Qui=1.0  Rio=0.167
    17844063 T>G  Pum=0.571  Qui=0.757  Rio=0.083
    17844089 A>G  Pum=0.556  Qui=0.8  Rio=0.107
    17844090 G>A  Pum=1.0  Qui=1.0  Rio=0.158
    17844113 G>A  Pum=1.0  Qui=1.0  Rio=0.2

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    80.0      5        0    9.0
Qui1     Qui   100.0      5        0    7.0
Qui2     Qui    55.6      9        0   11.0
Qui3     Qui    66.7      6        0    6.0
Qui4     Qui    75.0      4        0    7.0
Rio1     Rio     0.0      1        0    3.0
Rio2     Rio     0.0      5        0    7.5
Rio3     Rio     0.0      7        0    8.0
Rio4     Rio     0.0      6        0    9.0