Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    17843549 C>T  Pum=1.0  Qui=0.938  Rio=0.167
    17843572 T>G  Pum=0.692  Qui=0.522  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      8        0   12.0
Qui1     Qui   100.0      2        0    5.0
Qui2     Qui     0.0      1        0    5.0
Qui3     Qui   100.0      1        0    4.0
Qui4     Qui    60.0      5        0    9.0
Rio1     Rio     0.0      3        0    6.0
Rio2     Rio     0.0      1        0    5.0
Rio3     Rio     0.0      1        0    4.0
Rio4     Rio     0.0      2        0    7.0