Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    17740894 C>T  Pum=  Qui=1.0  Rio=0.091
    17740897 G>A  Pum=0.5  Qui=0.963  Rio=0.045
    17740913 G>A  Pum=0.5  Qui=0.926  Rio=0.043

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      8        0    9.0
Qui1     Qui     0.0      5        0    7.0
Qui2     Qui     0.0      6        0   10.5
Qui3     Qui     0.0      4        0    8.0
Qui4     Qui     0.0     13        0   14.5
Rio1     Rio   100.0      7        0   12.0
Rio2     Rio   100.0      6        0    8.5
Rio3     Rio    75.0      4        0   12.0
Rio4     Rio   100.0      6        0   10.0