Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    14841540 C>T  Pum=0.125  Qui=0.833  Rio=0.0
    14841571 C>T  Pum=0.556  Qui=0.833  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        1   13.0
Qui1     Qui    40.0      5        0    5.0
Qui2     Qui    60.0      5        1   12.0
Qui3     Qui     0.0      5        0    7.0
Qui4     Qui     0.0      2        1    5.0
Rio1     Rio    88.9      9        0   17.0
Rio2     Rio    75.0      8        0   15.0
Rio3     Rio   100.0      1        0    4.0
Rio4     Rio   100.0      6        0   11.0