Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 14 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     3.5     57        1    5.7
Qui1     Qui    85.9     71        0    5.9
Qui2     Qui    90.3    103        0   10.6
Qui3     Qui    59.3     81        0    8.8
Qui4     Qui    61.8    110        1    8.6
Rio1     Rio     1.4     73        0    8.1
Rio2     Rio     8.8     80        0    6.8
Rio3     Rio     4.3     47        0    6.3
Rio4     Rio     0.0     48        0    5.3